Shogun
The Shogun Machine Learning Toolbox is devoted to making machine learning tools available for free, to everyone. It provides efficient implementation of all standard ML algorithms.
PyTables
PyTables is an efficient method for storing and querying both numerical and textual data. PyTables provides seamless access to the convenient HDF5 library, a popular container for datasets that can grow to terabytes and beyond.
JuMP
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Julia
Julia is a fast and user-friendly programming language for high-performance scientific computing.
PyMC3
PyMC3 is a Python-based statistical modeling tool for Bayesian statistical modeling and Probabilistic Machine Learning which focuses on advanced Markov chain Monte Carlo and variational fitting algorithms.